Grimm's ODD
GRIMM, V., Berger, U., Bastiansen, F., Eliassen, S., Ginot, V., Giske, J., Goss-Custard, J., Grand, T., Heinz, S., Huse, G., Huth, A., Jepsen, J., Jorgensen, C., Mooij, W., Muller, B., Pe'er, G., Piou, C., Railsback, S., Robbins, A., Robbins, M., Rossmanith, E., Ruger, N., Strand, E., Souissi, S., Stillman, R., Vabo, R., Visser, U. & Deangelis, D. (2006). A Standard Protocol for Describing Individual-Based and Agent-Based Models. Ecological Modelling, 198 (1–2): 115–126. doi:10.1016/j.ecolmodel.2006.04.023
A standard protocol for describing individual-based and agent-based models, the authors describe the ODD protocol that has become the de facto standard to describe agent based models.
In papers these ODD descriptions either appear inline (rare), but mostly appear as a supplementary material (common), and in some cases they also follow the software distribuition.